Preprints currently under review at GigaScience

See preprints published at GigaScience.

Paper Authors Area Date
A haplotype-resolved draft genome of the European sardine (Sardina pilchardus) B. Louro ... A. V. M. Canario GigaScience Oct 2018
A highly predictive signature of cognition and brain atrophy for progression to Alzheimer's dementia A. Tam ... P. Bellec GigaScience Oct 2018
SciPipe - A workflow library for agile development of complex and dynamic bioinformatics pipelines S. Lampa ... O. Spjuth GigaScience Oct 2018
A multi-omics data simulator for complex disease studies and its application to evaluate multi-omics data analysis methods for disease classification R. Chung, C. Kang GigaScience Sep 2018
Arnav: Site specific error models to identify variants in RNA A. Ramu, D. Conrad GigaScience Aug 2018
New de novo assembly of the Atlantic bottlenose dolphin (Tursiops truncatus) improves genome completeness and provides haplotype phasing. K. A. Martinez-Viaud ... A. Zimin GigaScience Aug 2018
SMRT long-read sequencing and Direct Label and Stain optical maps allow the generation of a high-quality genome assembly for the European barn swallow (Hirundo rustica rustica) G. Formenti ... N. Saino GigaScience Jul 2018
Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data T. H. Webster ... M. A. W. Sayres GigaScience Jul 2018
Combinatorial Detection of Conserved Alteration Patterns for Identifying Cancer Subnetworks E. Hodzic ... S. C. Sahinalp GigaScience Jul 2018
Integrating genomic resources to present full gene and promoter capture probe sets for bread wheat L. Gardiner ... A. Hall GigaScience Jul 2018
Nanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad taxonomic scale H. Krehenwinkel ... S. Prost GigaScience Jun 2018
Aequatus: An open-source homology browser A. S. Thanki ... R. P. Davey GigaScience Jun 2018
NAT/NCS2-hound: A webserver for the detection and evolutionary classification of prokaryotic and eukaryotic nucleobase-cation symporters of the NAT/NCS2 family. A. Chaliotis ... G. Amoutzias GigaScience May 2018
Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes L. K. Johnson ... C. T. Brown GigaScience May 2018
Genome analyses show strong selection on coloration, morphological and behavioral phenotypes in birds-of-paradise S. Prost ... M. Irestedt GigaScience May 2018
Levodopa and dopamine dynamics in Parkinson's disease metabolomics R. C. Branco ... G. W. Miller GigaScience Apr 2018
Prot-SpaM: Fast alignment-free phylogeny reconstruction based on whole-proteome sequences C. Leimeister ... B. Morgenstern GigaScience Apr 2018
Lilikoi: an R package for personalized pathway-based classification modeling using metabolomics data F. Alakwaa ... L. Garmire GigaScience Mar 2018
Ximmer: A System for Improving Accuracy and Consistency of CNV Calling from Exome Data S. Sadedin ... A. Oshlack GigaScience Feb 2018
Genomes of trombidid mites reveal novel predicted allergens and laterally-transferred genes associated with secondary metabolism X. Dong ... B. L. Makepeace GigaScience Feb 2018
SNeCT: Scalable network constrained Tucker decomposition for integrative multi-platform data analysis. D. Choi, L. Sael GigaScience Nov 2017
Efficient and accurate detection of splice junctions from RNAseq with Portcullis D. Mapleson ... D. Swarbreck GigaScience Nov 2017
Toward A Scalable Exploratory Framework for Complex High-Dimensional Phenomics Data M. Kamruzzaman ... P. S. Schnable GigaScience Jul 2017
ascend: R package for analysis of single cell RNA-seq data A. Senabouth ... J. Powell GigaScience Jan 2017