Preprints currently under review at GigaScience

See preprints published at GigaScience.

Paper Authors Area Date
New de novo assembly of the Atlantic bottlenose dolphin (Tursiops truncatus) improves genome completeness and provides haplotype phasing. K. A. Martinez-Viaud ... A. Zimin GigaScience Aug 2018
SMRT long-read sequencing and Direct Label and Stain optical maps allow the generation of a high-quality genome assembly for the European barn swallow (Hirundo rustica rustica) G. Formenti ... N. Saino GigaScience Jul 2018
Integrating genomic resources to present full gene and promoter capture probe sets for bread wheat L. Gardiner ... A. Hall GigaScience Jul 2018
Nanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad taxonomic scale H. Krehenwinkel ... S. Prost GigaScience Jun 2018
Aequatus: An open-source homology browser A. S. Thanki ... R. P. Davey GigaScience Jun 2018
ARGs-OSP: online searching platform for antibiotic resistance genes distribution in metagenomic database and bacterial whole genome database A. N. Zhang ... T. Zhang GigaScience Jun 2018
NAT/NCS2-hound: A webserver for the detection and evolutionary classification of prokaryotic and eukaryotic nucleobase-cation symporters of the NAT/NCS2 family. A. Chaliotis ... G. Amoutzias GigaScience May 2018
Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes L. K. Johnson ... C. T. Brown GigaScience May 2018
Genome analyses show strong selection on coloration, morphological and behavioral phenotypes in birds-of-paradise S. Prost ... M. Irestedt GigaScience May 2018
Monitoring changes in the Gene Ontology and their impact on genomic data analysis M. Jacobson ... P. Pavlidis GigaScience May 2018
Prot-SpaM: Fast alignment-free phylogeny reconstruction based on whole-proteome sequences C. Leimeister ... B. Morgenstern GigaScience Apr 2018
Levodopa and dopamine dynamics in Parkinson's disease metabolomics R. C. Branco ... G. W. Miller GigaScience Apr 2018
Reproducible genomics analysis pipelines with GNU Guix R. Wurmus ... A. Akalin GigaScience Apr 2018
Lilikoi: an R package for personalized pathway-based classification modeling using metabolomics data F. Alakwaa ... L. Garmire GigaScience Mar 2018
Clustering trees: a visualisation for evaluating clusterings at multiple resolutions L. Zappia, A. Oshlack, GigaScience Mar 2018
Ximmer: A System for Improving Accuracy and Consistency of CNV Calling from Exome Data S. Sadedin ... A. Oshlack GigaScience Feb 2018
Genomes of trombidid mites reveal novel predicted allergens and laterally-transferred genes associated with secondary metabolism X. Dong ... B. L. Makepeace GigaScience Feb 2018
SNeCT: Scalable network constrained Tucker decomposition for integrative multi-platform data analysis. D. Choi, L. Sael GigaScience Nov 2017
Efficient and accurate detection of splice junctions from RNAseq with Portcullis D. Mapleson ... D. Swarbreck GigaScience Nov 2017
Toward A Scalable Exploratory Framework for Complex High-Dimensional Phenomics Data M. Kamruzzaman ... P. S. Schnable GigaScience Jul 2017
PhenoSpD: an atlas of phenotypic correlations and a multiple testing correction for the human phenome J. Zheng ... T. Gaunt GigaScience Jun 2017