Genome assembly preprints

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Preprint Authors Date Reviews & Comments Intersect Actions
An Improved Genome Assembly of the European Aspen Populus tremula Oct 2019
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New genome assemblies reveal patterns of domestication and adaptation across Brettanomyces (Dekkera) species Oct 2019
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SMART: Statistical Mitogenome Assembly with Repeats Oct 2019
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Genomic epidemiology of a complex, multi-species plasmid-borne blaKPC carbapenemase outbreak in Enterobacterales in the UK, 2009-2014 Oct 2019
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Factors influencing read coverage variation in a genome assembled using short reads Oct 2019
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The APL1 immune factor is encoded by a single ancestral gene in most Anopheles species and expanded to three paralogs with distinct function in the Anopheles gambiae complex Sep 2019
malaria Bookmark
Improved genome assembly and annotation of the soybean aphid (Aphis glycines Matsumura) Sep 2019
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Genomic evidence for revising the Escherichia genus and description of Escherichia ruysiae sp. nov. Sep 2019
nanopore Bookmark
Hap2-Ino80 facilitated transcription promotes de novo establishment of CENP-A chromatin Sep 2019
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FeGenie: a comprehensive tool for the identification of iron genes and iron gene neighborhoods in genomes and metagenome assemblies Sep 2019
metagenomics Bookmark
Draft genome of a porcupinefish, Diodon Holocanthus Sep 2019
nanopore Bookmark
BITACORA: A comprehensive tool for the identification and annotation of gene families in genome assemblies Sep 2019
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Genome Sequencing and Transcriptome Analysis Reveal Recent Species-specific Gene Duplications in the Plastic Gilthead Sea Bream Sep 2019
ncrna polyploid rnaseq Bookmark
A de novo chromosome-level genome assembly of Coregonus sp. \"Balchen\": one representative of the Swiss Alpine whitefish radiation Sep 2019
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Chromosome-scale de novo assembly and phasing of a Chinese indigenous pig genome Sep 2019
bionano Bookmark
An improved de novo assembly and annotation of the tomato reference genome using single-molecule sequencing, Hi-C proximity ligation and optical maps Sep 2019
bionano Bookmark
A high-quality reference genome assembly of the saltwater crocodile, Crocodylus porosus, reveals patterns of selection in Crocodylidae Sep 2019
natural_selection Bookmark
Long transposon-rich centromeres in an oomycete reveal divergence of centromere features in Stramenopila-Alveolata-Rhizaria lineages Sep 2019
malaria Bookmark
DeepMAsED: Evaluating the quality of metagenomic assemblies Sep 2019
metagenomics Bookmark
SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme Sep 2019
linked_reads nanopore Bookmark