Genome assembly preprints

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Preprint Authors Date Reviews & Comments Intersect Actions
An Improved Genome Assembly of the European Aspen Populus tremula 18th Oct 2019
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New genome assemblies reveal patterns of domestication and adaptation across Brettanomyces (Dekkera) species 18th Oct 2019
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SMART: Statistical Mitogenome Assembly with Repeats 17th Oct 2019
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Genomic epidemiology of a complex, multi-species plasmid-borne blaKPC carbapenemase outbreak in Enterobacterales in the UK, 2009-2014 4th Oct 2019
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Factors influencing read coverage variation in a genome assembled using short reads 3rd Oct 2019
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The APL1 immune factor is encoded by a single ancestral gene in most Anopheles species and expanded to three paralogs with distinct function in the Anopheles gambiae complex 29th Sep 2019
malaria Bookmark
Improved genome assembly and annotation of the soybean aphid (Aphis glycines Matsumura) 26th Sep 2019
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Genomic evidence for revising the Escherichia genus and description of Escherichia ruysiae sp. nov. 26th Sep 2019
nanopore Bookmark
Hap2-Ino80 facilitated transcription promotes de novo establishment of CENP-A chromatin 24th Sep 2019
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FeGenie: a comprehensive tool for the identification of iron genes and iron gene neighborhoods in genomes and metagenome assemblies 24th Sep 2019
metagenomics Bookmark
Draft genome of a porcupinefish, Diodon Holocanthus 21st Sep 2019
nanopore Bookmark
BITACORA: A comprehensive tool for the identification and annotation of gene families in genome assemblies 20th Sep 2019
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Genome Sequencing and Transcriptome Analysis Reveal Recent Species-specific Gene Duplications in the Plastic Gilthead Sea Bream 20th Sep 2019
ncrna polyploid rnaseq Bookmark
A de novo chromosome-level genome assembly of Coregonus sp. \"Balchen\": one representative of the Swiss Alpine whitefish radiation 17th Sep 2019
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Chromosome-scale de novo assembly and phasing of a Chinese indigenous pig genome 17th Sep 2019
bionano Bookmark
An improved de novo assembly and annotation of the tomato reference genome using single-molecule sequencing, Hi-C proximity ligation and optical maps 15th Sep 2019
bionano Bookmark
A high-quality reference genome assembly of the saltwater crocodile, Crocodylus porosus, reveals patterns of selection in Crocodylidae 13th Sep 2019
natural_selection Bookmark
Long transposon-rich centromeres in an oomycete reveal divergence of centromere features in Stramenopila-Alveolata-Rhizaria lineages 13th Sep 2019
malaria Bookmark
DeepMAsED: Evaluating the quality of metagenomic assemblies 11th Sep 2019
metagenomics Bookmark
SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme 9th Sep 2019
linked_reads nanopore Bookmark