Linked Reads preprints

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Preprint Authors Date Reviews & Comments Intersect Actions
SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme 9th Sep 2019
genome_assembly nanopore Bookmark
Sequencing smart: De novo sequencing and assembly approaches for non-model mammals. 10th Aug 2019
bionano genome_assembly Bookmark
BIRD: Identifying Cell Doublets via Biallelic Expression from Single cells 23rd Jul 2019
rnaseq singlecell_rna_sequencing Bookmark
RobustClone: A robust PCA method of tumor clone and evolution inference from single-cell sequencing data 11th Jun 2019
Bookmark
Aquila: diploid personal genome assembly and comprehensive variant detection based on linked reads 6th Jun 2019
genome_assembly Bookmark
De novo phased assembly of the Vitis riparia grape genome 18th May 2019
genome_assembly Bookmark
TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools 10th May 2019
genome_assembly Bookmark
First near complete haplotype phased genome assembly of River buffalo (Bubalus bubalis) 28th Apr 2019
bionano genome_assembly Bookmark
Direct Comparative Analysis of 10X Genomics Chromium and Smart-seq2 24th Apr 2019
ncrna rnaseq singlecell_rna_sequencing Bookmark
Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA-sequencing 18th Feb 2019
crispr rnaseq singlecell_rna_sequencing Bookmark
Novel Algorithms for the Taxonomic Classification of Metagenomic Linked Reads 16th Feb 2019
metagenomics Bookmark
Single-cell RNA sequencing of a European and an African lymphoblastoid cell line 14th Feb 2019
rnaseq singlecell_rna_sequencing Bookmark
Comparative analysis of commercially available single-cell RNA sequencing platforms for their performance in complex human tissues 6th Feb 2019
rnaseq singlecell_rna_sequencing Bookmark
scruff: An R/Bioconductor package for preprocessing single-cell RNA-sequencing data 18th Jan 2019
rnaseq singlecell_rna_sequencing Bookmark
Systematic analysis of dark and camouflaged genes: disease-relevant genes hiding in plain sight 10th Jan 2019
nanopore Bookmark
Genome assembly of the A-group Wolbachia in Nasonia oneida and phylogenomic analysis of Wolbachia strains revealed genome evolution and lateral gene transfer 1st Jan 2019
genome_assembly recombination Bookmark
De novo genome assembly of the olive fruit fly (Bactrocera oleae) developed through a combination of linked-reads and long-read technologies Dec 2018
genome_assembly nanopore Bookmark
Direct capture of CRISPR guides enables scalable, multiplexed, and multi-omic Perturb-seq Dec 2018
crispr rnaseq singlecell_rna_sequencing Bookmark
Genome-wide recombination map construction from single individuals using linked-read sequencing Dec 2018
recombination Bookmark
Mutation detection in thousands of acute myeloid leukemia cells using single cell RNA-sequencing Oct 2018
rnaseq singlecell_rna_sequencing Bookmark